rs27387637 SNP Detail

Summary

• ID
  rs27387637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152788840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA CAATAGCTTC AGGAACCAGT
  Y
  TGGCAGCATG GCTTTGTGCT GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37561164	NES08926853	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T		C	C
ss147977610	ENSMUSSNP2131877	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320563537	CHEV_2_152772656	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27387637					SNP	C	C	C	T	?	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37561164	NES08926853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152788840 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dusp15	dual specificity phosphatase-like 15			Intron
				Noncoding-Transcript-Variant
Rr567515	regulatory region 567515			198 bp proximal