TGAAA TGACTTTAGA CTAAGTGGTG R ATGAGTAACA GCAGGTTGAT GGACA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37562015 | NES08909802 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | A | G | A | A | G | A | G | G | G | ||
ss147970865 | ENSMUSSNP5989676 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | ||||||||||||
ss320562904 | CHEV_2_152478693 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
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rs27387186 | SNP | A | G | G | A | G | A | A | G | A | A | G | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37562015 | NES08909802 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:152494877 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1700030C14Rik | RIKEN cDNA 1700030C14 gene | within coordinates | ||||||
D2Ertd691e | DNA segment, Chr 2, ERATO Doi 691, expressed | 1841 bp distal | ||||||
Rr374088 | regulatory region 374088 | within coordinates | ||||||
Rr567410 | regulatory region 567410 | within coordinates | ||||||
Rr567411 | regulatory region 567411 | 1088 bp proximal | ||||||
Rr567412 | regulatory region 567412 | 1385 bp proximal | ||||||
Tssr26849 | transcription start site region 26849 | 1296 bp downstream | ||||||
Tssr26850 | transcription start site region 26850 | 1304 bp downstream | ||||||
Tssr26851 | transcription start site region 26851 | 1331 bp downstream | ||||||
Tssr26852 | transcription start site region 26852 | 1357 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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