rs27387176 SNP Detail

Summary

• ID
  rs27387176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152496029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT ACCGAAGGTC AGCCTACGCC
  M
  AGGTCTTGGT ACACTGGGTC CCTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37562005	NES08909785	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C	C	C	C	C		C	A	A	A		C
ss320562921	CHEV_2_152479845	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27387176					SNP	C	A	A	C	C	C	C	C	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562005	NES08909785	PERLEGEN	MM_PANEL	f	SNP	A/C
ss147970901	ENSMUSSNP4969859	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152496029 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	134 bp downstream
Rr567410	regulatory region 567410	538 bp distal
Rr567411	regulatory region 567411	within coordinates
Rr567412	regulatory region 567412	233 bp proximal
Rr567413	regulatory region 567413	1745 bp proximal
Tssr26849	transcription start site region 26849	144 bp downstream
Tssr26850	transcription start site region 26850	152 bp downstream
Tssr26851	transcription start site region 26851	179 bp downstream
Tssr26852	transcription start site region 26852	205 bp downstream