rs27387175 SNP Detail

Summary

• ID
  rs27387175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152496195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA GGAAGAATCT GCCTCAAGGT
  R
  GAGCTGATAG CCAATCACTT GTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37562004	NES08909787	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G		A	A	A		G
ss147970906	ENSMUSSNP2140153	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss320562922	CHEV_2_152480011	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27387175					SNP	G	A	A	G	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37562004	NES08909787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152496195 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	within coordinates
Rr374088	regulatory region 374088	300 bp downstream
Rr567410	regulatory region 567410	704 bp distal
Rr567411	regulatory region 567411	within coordinates
Rr567412	regulatory region 567412	67 bp proximal
Rr567413	regulatory region 567413	1579 bp proximal
Tssr26849	transcription start site region 26849	16 bp upstream
Tssr26850	transcription start site region 26850	9 bp upstream
Tssr26851	transcription start site region 26851	13 bp downstream
Tssr26852	transcription start site region 26852	39 bp downstream