rs27387165 SNP Detail

Summary

• ID
  rs27387165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90958927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATCTATG CTAAAACTTG GACTTTTTAT TGTATATAAA
  TTATACCCAG ATGAAATTGA CAAAAACCAA CCATCAGGGA CATGAGCTCC CAGCACCCAC
  Y
  AAGCAACCTC TGTACCTCCT CTGCCACATT TGTGGGCCCC CTTTTCTCTG AACTGTACTC
  CTCCATACAG AACCTCCCAA GATCCACTTG GATTGTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37605002	NES09104818	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	T	C	T	C		T	C	T	T		C
ss146922943	ENSMUSSNP4074261	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320391811	CHEV_2_90968739	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27387165					SNP	T	T	C	T	C	T	T	T	C	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605002	NES09104818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90958927 () rs orientation: forward

Symbol	Name	Function Class
Mybpc3	myosin binding protein C, cardiac	Intron
Rr560654	regulatory region 560654	1539 bp proximal