rs27387157 SNP Detail

Summary

• ID
  rs27387157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90959332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACC CCTAACCCTA ATTCCAGTCC
  W
  TTTTGTTCCT AGGGGAAGAA GGCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37604994	NES09104826	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A	T	A	T		A		T
ss146922972	ENSMUSSNP5549497	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320391817	CHEV_2_90969144	CHEVERUD	SCREENING_POP	f	SNP											T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27387157					SNP	A	A	T	A	T	A	A	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604994	NES09104826	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90959332 () rs orientation: forward

Symbol	Name	Function Class
Mybpc3	myosin binding protein C, cardiac	Intron
Rr560654	regulatory region 560654	1134 bp proximal