rs27387064 SNP Detail

Summary

• ID
  rs27387064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90995501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGCCAT ATAAAGCTAG
  CTTCTGTAAA TGCTGCTAGG TTGCCCATAG TCGTCCTCCC GTGGACCAGC TCCTTGGGAA
  GTTTACCCAA GGTCACGGAG TAGGCATCTG AAGATGACTG AAGGCAGCTG ATTATCCTGA
  GTTAGCATAT ACTTCTGATA AGGTCCTCCC CAAAGCAGCG GCAATCCCAT ACCACCACTG
  Y
  CCTGCTGATA TAACAGGGCC TCCTCCAGCT ACAAAGATTG TTTCTATCTG CAACCACTTA
  GTGCCTATAG TGTGTGGTAA AAGCCATGAT AAGCAAAATG AGGCAGCAGC CAAGTCAAAT
  GATTCATGGT GCGCAGGCTC CTGACAATCA CCCACATGTC TGACATCTCT CAGAGAAGCC
  TGGTTTGACA CAAGAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37604899	NES09103792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27387064					SNP	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37604899	NES09103792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90995501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Madd	MAP-kinase activating death domain			Intron
				Noncoding-Transcript-Variant
Rr560659	regulatory region 560659			within coordinates