rs27385662 SNP Detail

Summary

• ID
  rs27385662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151945544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACAAAC AAACAAAAAC
  AAAAGTGTAT GATTCTGGCT CTGGACCCAC ACTAGTCCAG CCTCTCCACA ATGAATAAGT
  TTTGACAAGT CCACCGGCCT AAAATGTTTG ACATAGCTCA GCTTATTTCT GGGAACTTTA
  CGTCACACCT CCTACTCCAG CCAGCCAGCC AGGACAGGAG AGCAACTTCT TGGTGCCCTG
  M
  TTTGTGATCC CTTGGTCCCC TCTCAGGTCA CCCAAGGCAG ATAGCTGTGT GCTTCTGGGC
  CCTTAAAATG CCTGTCCCAT TCAAAAGCAG AATAACAGGG AAAGTTAGGT TCAGCACCTA
  CAGCCACCCT TGCCCAGGAA AGAGCAGGGG CCTGGGTCTC CACACCCAAA GGGATGCAGG
  ATGGCTGGCT ATTCTGGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563305	NES08907950	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385662					SNP	A	A	A	A	A	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563305	NES08907950	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151945544 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	1053 bp downstream
Cpgi12438	CpG island 12438	1384 bp proximal
Gm31475	predicted gene, 31475	460 bp upstream
Rr567286	regulatory region 567286	631 bp distal
Rr567287	regulatory region 567287	1059 bp proximal
Rr567288	regulatory region 567288	1822 bp proximal
Rr567289	regulatory region 567289	1884 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	1892 bp upstream
Tssr20767	transcription start site region 20767	1178 bp upstream
Tssr20768	transcription start site region 20768	1290 bp upstream
Tssr26780	transcription start site region 26780	1743 bp downstream