rs27385661 SNP Detail

Summary

• ID
  rs27385661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151946966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCACAGG AGCGGGCTTG
  TACAGCTGTT CATGCTGGAT ACTTGCTGTG TAGTCAGGTG ACCTGTCTTT CAGCGGTTTT
  TTATTGTTTT GTTTCCCTGG AGTGGACCTA CTTTGGGGAG GCCCTTCAGT AACCATACCT
  ATTTCTATTT CCTGGATATG TTTAGATGAT TTGCGACACG CGGAACTTCA GAGCAGAACC
  R
  TAAAGAATCA GCACAACTCA AGCCACTGTG GGGAGTTCCT GACGCTGAGC CTAGATGAGA
  GACAGCGCTG GGATCCAAAG CGATCTATGG AGCGGTGTTG CCCGGATTTG GGCCTCGGCT
  CACTCACTCA TTAGCTCCAT ACCTTGTGAG TGTGTGTGTG TGTGGGGGGG GGCGGTCATA
  ACTTTTCTGT GCCTCAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563304	NES08907922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385661					SNP	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563304	NES08907922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151946966 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	within coordinates
Cpgi12438	CpG island 12438	within coordinates
Gm31475	predicted gene, 31475	1882 bp upstream
Rr567287	regulatory region 567287	within coordinates
Rr567288	regulatory region 567288	400 bp proximal
Rr567289	regulatory region 567289	462 bp proximal
Rr567290	regulatory region 567290	614 bp proximal
Rr567291	regulatory region 567291	1056 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	mRNA-UTR
Tssr20767	transcription start site region 20767	228 bp downstream
Tssr20768	transcription start site region 20768	111 bp downstream
Tssr20769	transcription start site region 20769	676 bp upstream
Tssr20770	transcription start site region 20770	1210 bp upstream
Tssr26780	transcription start site region 26780	321 bp downstream
Tssr26781	transcription start site region 26781	994 bp downstream