rs27385660 SNP Detail

Summary

• ID
  rs27385660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151947305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCTTGTG AGTGTGTGTG
  TGTGTGGGGG GGGGCGGTCA TAACTTTTCT GTGCCTCAGT TTCCTTCACT GTAAAATGGA
  ATTGGCATCG TGCTCAGCTA GCAGGGTCGC TCTGAAATGT GAGTAGGTCA TCACACTTGG
  CTTTACTTCG TGGAGGCCAC TGTTCCCAGC TTCTACTGAG AGCCGACTCA TCCTCTCTGG
  R
  CAGATCTGAC CGCCCGCGTC CTCGCCTCGG AGGGCCTGAG TCACCACGCT GTGCGTCACC
  CGCGCCTCTG CTCCGCGACC TGCAAATTCA CCCTGAGTCA GCGGCCGGGC GCGTCCATTG
  AGCGCATCGC GAGGGGGCGG CAGAGCGCCA CGGCGGGCAG TGGGCAGCTA GGTCAGAGTG
  AGACACGCAG GGAGGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563303	NES08907908	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385660					SNP	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563303	NES08907908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151947305 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	within coordinates
Rr567287	regulatory region 567287	within coordinates
Rr567288	regulatory region 567288	61 bp proximal
Rr567289	regulatory region 567289	123 bp proximal
Rr567290	regulatory region 567290	275 bp proximal
Rr567291	regulatory region 567291	717 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	mRNA-UTR
Tssr20767	transcription start site region 20767	567 bp downstream
Tssr20768	transcription start site region 20768	450 bp downstream
Tssr20769	transcription start site region 20769	337 bp upstream
Tssr20770	transcription start site region 20770	871 bp upstream
Tssr26780	transcription start site region 26780	within coordinates
Tssr26781	transcription start site region 26781	655 bp downstream