rs27385656 SNP Detail

Summary

• ID
  rs27385656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151948226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATGATC CGTCGCAGGT
  ACTCAAAGTG CTGAGGTCAC CCCGGAGCTG ATCTTTGCCT CTGGGAGCAA CTCTGTTAAA
  GTAGTTGCTG TTCTTTCTGT ACAGAGGAGA AACTGAGGCA CAGGAAGCTT GGATTTTTTT
  TTTTTTTTTT TTTTAGCAAC TTGACCTATG TCAAGTGCTT ACAAGATGGT ACCGTGAGAC
  Y
  TTACACCCAG GCAACCTGCA TATCCTGGTG TCTCTTCTGG CCTTGACAGT CTTGGCAATG
  GTTTGGGTGT GTCATGTCTA TTGGGAGGAT CTTGTCCAGT CAGGAAGTAG GCAAGGATAA
  GGTCAGTCTA TCATGGAAGG AGGGTCCCCT CAGTAACTAG GGGTTGGAGT TTGTGTCGAG
  TTAGGCCAAC ATGGCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563299	NES08907895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385656					SNP	T	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563299	NES08907895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151948226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			194 bp upstream
Cpgi12438	CpG island 12438			138 bp distal
Rr567287	regulatory region 567287			861 bp distal
Rr567288	regulatory region 567288			772 bp distal
Rr567289	regulatory region 567289			777 bp distal
Rr567290	regulatory region 567290			625 bp distal
Rr567291	regulatory region 567291			within coordinates
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20767	transcription start site region 20767			1488 bp downstream
Tssr20768	transcription start site region 20768			1371 bp downstream
Tssr20769	transcription start site region 20769			567 bp downstream
Tssr20770	transcription start site region 20770			44 bp downstream
Tssr20771	transcription start site region 20771			1707 bp upstream
Tssr26780	transcription start site region 26780			919 bp upstream
Tssr26781	transcription start site region 26781			250 bp upstream