rs27385655 SNP Detail

Summary

• ID
  rs27385655
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151948306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTGCTG TTCTTTCTGT
  ACAGAGGAGA AACTGAGGCA CAGGAAGCTT GGATTTTTTT TTTTTTTTTT TTTTAGCAAC
  TTGACCTATG TCAAGTGCTT ACAAGATGGT ACCGTGAGAC TTTACACCCA GGCAACCTGC
  ATATCCTGGT GTCTCTTCTG GCCTTGACAG TCTTGGCAAT GGTTTGGGTG TGTCATGTCT
  R
  TTGGGAGGAT CTTGTCCAGT CAGGAAGTAG GCAAGGATAA GGTCAGTCTA TCATGGAAGG
  AGGGTCCCCT CAGTAACTAG GGGTTGGAGT TTGTGTCGAG TTAGGCCAAC ATGGCTTCCC
  ATCCCTTCTT CCAGCTTCTT GAGATTCATA GACCCTATGA CCCCTAAGTC CACAGATGTT
  TTCGTCCTAA AATTTGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563298	NES08907896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385655					SNP	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563298	NES08907896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151948306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			274 bp upstream
Cpgi12438	CpG island 12438			218 bp distal
Rr567287	regulatory region 567287			941 bp distal
Rr567288	regulatory region 567288			852 bp distal
Rr567289	regulatory region 567289			857 bp distal
Rr567290	regulatory region 567290			705 bp distal
Rr567291	regulatory region 567291			within coordinates
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20767	transcription start site region 20767			1568 bp downstream
Tssr20768	transcription start site region 20768			1451 bp downstream
Tssr20769	transcription start site region 20769			647 bp downstream
Tssr20770	transcription start site region 20770			124 bp downstream
Tssr20771	transcription start site region 20771			1627 bp upstream
Tssr26780	transcription start site region 26780			999 bp upstream
Tssr26781	transcription start site region 26781			330 bp upstream