rs27385653 SNP Detail

Summary

• ID
  rs27385653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151948702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCCTGT CTTCCTGTGT
  GAACTTCACA AGAGCAGGGA CTTTGCCATC TTGGCAGTTG CCTTCAAGCT GTGACTGATT
  TAGCCCAGTA TGCTCTGTCA GCACCAATGA GCCTTTGGGC AAACTTTCTC CACCCCAGGA
  AGTGCTTCCA TCCCTCTATT GTGGTCATTG TTTTAGCTTT TATGTGCTCA TGATGCTAGG
  R
  ATTGCGCTCC CCTGCGTGCG TGCGCACGTT CAGCAGGAGC TCCACCATTG CGCTGCCTCC
  CTAACATTTT ATCCCTTCGT TGCTTCTAAT TCCGTAATCA TTCTGTCTTG ATGTCAGCGC
  CTCCCCTGCC CACCCTATTG GGTTTGGCCA TCTGTGACCT CACAGGCACC TGGGTGCCCC
  TTAGCATAGC TGGGATCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563296	NES08907898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385653					SNP	A	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563296	NES08907898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151948702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			670 bp upstream
Cpgi12438	CpG island 12438			614 bp distal
Rr567287	regulatory region 567287			1337 bp distal
Rr567288	regulatory region 567288			1248 bp distal
Rr567289	regulatory region 567289			1253 bp distal
Rr567290	regulatory region 567290			1101 bp distal
Rr567291	regulatory region 567291			244 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20767	transcription start site region 20767			1964 bp downstream
Tssr20768	transcription start site region 20768			1847 bp downstream
Tssr20769	transcription start site region 20769			1043 bp downstream
Tssr20770	transcription start site region 20770			520 bp downstream
Tssr20771	transcription start site region 20771			1231 bp upstream
Tssr26780	transcription start site region 26780			1395 bp upstream
Tssr26781	transcription start site region 26781			726 bp upstream