rs27385651 SNP Detail

Summary

• ID
  rs27385651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151949226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCAAAGC TATGTTGTCG
  TGTGGTTTTT GAGACAGGAT GTGTCTCTAT ATAACCTAGG CTGCCATGAA ATTCATCATC
  CTTCTGTTTC AGTCTCCCGA GTGCTGGTAT TACAGGTGGT TTCCACCAGG CCCAGCTCAA
  AGTCTATTTT ATTGAGCTAA AATAAGAAAC CAGCAGGAAT GTTCTCTTGA GGCCCGAAGG
  R
  AAAATGCACT TTCCCAAGTC TTTCTTTTTC TTTTGTGTGA CAAAACATCC TGACCCATGC
  AACTTTAGGG TGAAAGTTTG TTTGTTTGTT TGTTTGTTTG TTTGTTTTTT GAGACAGGGT
  TTCTCTGTAT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACTAGGCTG GCCTCGAACT
  CAGAAATCCG CCTGCCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37563294	NES08907874	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27385651					SNP	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37563294	NES08907874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151949226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230118N01Rik	RIKEN cDNA 9230118N01 gene			1194 bp upstream
Cpgi12438	CpG island 12438			1138 bp distal
Rr567287	regulatory region 567287			1861 bp distal
Rr567288	regulatory region 567288			1772 bp distal
Rr567289	regulatory region 567289			1777 bp distal
Rr567290	regulatory region 567290			1625 bp distal
Rr567291	regulatory region 567291			768 bp distal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr20769	transcription start site region 20769			1567 bp downstream
Tssr20770	transcription start site region 20770			1044 bp downstream
Tssr20771	transcription start site region 20771			707 bp upstream
Tssr20772	transcription start site region 20772			1757 bp upstream
Tssr26780	transcription start site region 26780			1919 bp upstream
Tssr26781	transcription start site region 26781			1250 bp upstream
Tssr26782	transcription start site region 26782			1927 bp downstream