rs27385139 SNP Detail

Summary

• ID
  rs27385139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGTTTCC AGCAGCAGCT
  CCCCCTTTCT TCCTGCAGTG TAACCCAGTG ATGATCGATG CCATCAAGGT GTCTGCTGCT
  CACAGGGCCC GGTACTTCTG GGGTAACCTA CCCGGAATGA ACAGGTAAGA GTCCTGAGGG
  GGACAGGGAA CAGAGAGCAG AGTTATATCT AGGTCTTCAT TGACATTCTA GCCTTCTAGA
  M
  AGTCCTGACT TTGGGCTGCT CTGGATAATT GGAGCACTGG GCAGGACTCC TCAGGCAGCT
  GCAGTGCTCC AGCTTCAGGG CAGGCGTTTC TCCAGGTCCC TCCAAGGGCT GTGAGTACTG
  TCAAGCCCCT CTGTTCTTTC CCGCTGTGCT AAGGCTTCCA TTGGCAAATG TTAAATGTCA
  AAGACACTAT TCCTTCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559065	NES08916622	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		A	A		C
ss320564611	CHEV_2_153549380	CHEVERUD	SCREENING_POP	f	SNP				A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385139					SNP	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559065	NES08916622	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565564 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	186 bp distal
Rr567733	regulatory region 567733	745 bp proximal