rs27385138 SNP Detail

Summary

• ID
  rs27385138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACCTAC CCGGAATGAA
  CAGGTAAGAG TCCTGAGGGG GACAGGGAAC AGAGAGCAGA GTTATATCTA GGTCTTCATT
  GACATTCTAG CCTTCTAGAA AGTCCTGACT TTGGGCTGCT CTGGATAATT GGAGCACTGG
  GCAGGACTCC TCAGGCAGCT GCAGTGCTCC AGCTTCAGGG CAGGCGTTTC TCCAGGTCCC
  W
  CCAAGGGCTG TGAGTACTGT CAAGCCCCTC TGTTCTTTCC CGCTGTGCTA AGGCTTCCAT
  TGGCAAATGT TAAATGTCAA AGACACTATT CCTTCTGTCC CTGAGATGAG GTGGACCCTG
  AACCAGCACC TGGTGACCAA CCATGGGCAC ACCTGAGTAG AAGTTACCGG CTCCCTCCAG
  TTTTCTCAGT CAGGAGCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559064	NES08916623	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	T		A	A	A		T
ss148002197	ENSMUSSNP4605330	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				T
ss320564612	CHEV_2_153549481	CHEVERUD	SCREENING_POP	f	SNP							A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385138					SNP	T	A	T	A	T	T	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559064	NES08916623	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565665 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	287 bp distal
Rr567733	regulatory region 567733	644 bp proximal