rs27385136 SNP Detail

Summary

• ID
  rs27385136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAACA GAGAGCAGAG
  TTATATCTAG GTCTTCATTG ACATTCTAGC CTTCTAGAAA GTCCTGACTT TGGGCTGCTC
  TGGATAATTG GAGCACTGGG CAGGACTCCT CAGGCAGCTG CAGTGCTCCA GCTTCAGGGC
  AGGCGTTTCT CCAGGTCCCT CCAAGGGCTG TGAGTACTGT CAAGCCCCTC TGTTCTTTCC
  Y
  GCTGTGCTAA GGCTTCCATT GGCAAATGTT AAATGTCAAA GACACTATTC CTTCTGTCCC
  TGAGATGAGG TGGACCCTGA ACCAGCACCT GGTGACCAAC CATGGGCACA CCTGAGTAGA
  AGTTACCGGC TCCCTCCAGT TTTCTCAGTC AGGAGCATTT CCCACCCTTA AGGAATCTTT
  TTTTTCCCCA AGGCAGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559062	NES08916625	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		T	T	T		C
ss148002205	ENSMUSSNP6316849	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
ss320564614	CHEV_2_153549522	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385136					SNP	C	C	T	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559062	NES08916625	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565706 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	328 bp distal
Rr567733	regulatory region 567733	603 bp proximal