rs27385135 SNP Detail

Summary

• ID
  rs27385135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153565780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCTGGA TAATTGGAGC
  ACTGGGCAGG ACTCCTCAGG CAGCTGCAGT GCTCCAGCTT CAGGGCAGGC GTTTCTCCAG
  GTCCCTCCAA GGGCTGTGAG TACTGTCAAG CCCCTCTGTT CTTTCCCGCT GTGCTAAGGC
  TTCCATTGGC AAATGTTAAA TGTCAAAGAC ACTATTCCTT CTGTCCCTGA GATGAGGTGG
  R
  CCCTGAACCA GCACCTGGTG ACCAACCATG GGCACACCTG AGTAGAAGTT ACCGGCTCCC
  TCCAGTTTTC TCAGTCAGGA GCATTTCCCA CCCTTAAGGA ATCTTTTTTT TCCCCAAGGC
  AGGGTTTCTC TGTGTAGCTC TGGCTGTCCT GGAACTCACT TTGTAGGCCA GGCTGGCCTC
  GAACTCAGAA ATCCGCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559061	NES08916626	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		G	G	G		A
ss148002210	ENSMUSSNP1739299	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss320564615	CHEV_2_153549596	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385135					SNP	A	A	G	A	G	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559061	NES08916626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153565780 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Rr567732	regulatory region 567732	402 bp distal
Rr567733	regulatory region 567733	529 bp proximal