rs27385132 SNP Detail

Summary

• ID
  rs27385132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153566527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACGACCA ATTTGTGTGC
  TCTTCTCTGG GGACAGTCAC CTCTCCCGCT CCCAGCTCTC CTTAGTTGTC TATAGCTCTT
  TGTGTAGGGT TGAGACCTCA TGAGCTTTTC TTCATCCAGA TTAGCATATT CACTGGTGTT
  GTCCTTGTCA CCTCACATCT GGACATTCAG ACCCAGTGTC TACTTCTCAG TTTTAGACAT
  R
  AAGCAAGTGG CTCTGCACAG GCCTCCTTAT CTCTTCCTTT GCGATTCCAA GAACAGCCTG
  CTAACTAAGA GAAAAATTGT GCCTGTAGTA GCCATCCCAG ATATGCAAAT GAGTTGAGCT
  GTGAAACACT TTTAGAAGGT TGGAGTAGAA GCATAAATTT TGGGGAAAGT CTGGGCAGGA
  GTCAGAGGGT CCTGAAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559058	NES08916608	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A		G	G	G		A
ss148002223	ENSMUSSNP1407681	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
ss320564625	CHEV_2_153550343	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385132					SNP	A	A	G	G	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559058	NES08916608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153566527 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	1485 bp downstream
Rr567732	regulatory region 567732	1149 bp distal
Rr567733	regulatory region 567733	within coordinates