rs27385129 SNP Detail

Summary

• ID
  rs27385129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153567334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAGACCA GCTTGGAGCT
  CAGTGTTATT AGGTGAAGAA TGGCTTGGAA AGAGAGACAC AAGTATTTCT GACTGAATGG
  TGCAGGCCTA TGCATGGTGC CAGTTAGTTA TACATGGGCA CAGGGCATTC CAAGAGATTA
  GTTGCTTGAA TTAATTGAAG TTAATTTAAG GTATGCAGTA TCTAGGAGGA GGAATTAGAG
  Y
  GGATACGGGG CAGTAATGAG GTGGTGTGTG CAGAAGGGGC TGAGGTGGTT GATTATGATG
  CTGTGTCCCA GAAGGTGCCA TCTGGTGAGA AAACAAATGA AGGTGGTGGC AGTGACCTTT
  GCGGTTTGTA GCATGGCAGG ATATTTGAGC CTTTGTTTAT GCATTTGGTG GCTTCCAGGC
  TAGGATGATG GGATAGCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37559055	NES08916611	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C		T	T	T		C
ss148002240	ENSMUSSNP2557159	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320564630	CHEV_2_153551150	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27385129					SNP	C	T	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559055	NES08916611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153567334 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	678 bp downstream
Rr567732	regulatory region 567732	1956 bp distal
Rr567733	regulatory region 567733	586 bp distal