rs27385128 SNP Detail

Summary

• ID
  rs27385128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153568092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAGCCTG CTGGCCTGAG
  CTTGATCCTC AGGGAAAGAG AGAACAGACT ACAAAATTGT TCTCTGACCT CCAAACACTG
  TGGGATGTAC GTCCATACAC ATTAAATATA CATGCACACA TTAGCAGTAA ATACATTTTT
  AAAGAAGAGT TAGGGTGGCA TTGGAAGATG TATGTCCATG CACATTAATC ATACGTTTAC
  R
  CATTAGCAGT AAATACATCT TAAAAAAAGA ATCAGGGCCG GCTTTGGACA GCTGGAAGTT
  CAAGGGAGAT GCTTGGCATG AATCCTCAGC CCCCCGTGGC ACTTGTTCTT CCTTTGTTTT
  GACTTTGAAG TGGACCCTTG GCCTAACCAC ACAGACTTGT GTGTTTTCAT CCTGTGTTTG
  AGCATTGCTT ATTGCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37559054	NES08916561	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		G	G	G
ss148002287	ENSMUSSNP150612	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss320564637	CHEV_2_153551908	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27385128					SNP	A	A	G	A	G	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559054	NES08916561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153568092 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	within coordinates
Rr567733	regulatory region 567733	1344 bp distal