rs27384941 SNP Detail

Summary

• ID
  rs27384941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92159925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGCTG AGAGTACCAA
  GTAGGCTTTC ATGTCTTGAG TGGAGACACA CCATGTACAT TCAAAAAGCC AAGGAGATTT
  GCTGTGGCTG TGCAGAGACC ATGAGGCTAC CCAGGTTAGA CTTAAAGAAG ATCCTGGAAA
  AGTGTCCTGG AGAAGAGCGA GCCTGTGGAT CGTCACCATT GTGCAGAGAT GTGGGTTGAG
  Y
  CCTAGCAGCA AGGGGGTCTA TGGAAGTGTT TACAGGCAAA TACTTAACTG GATGTCTTAG
  AGATTCCCTC TTTTTGCTGG TAGACAACAG GTTGGAAATG GACAGGAAGC ACAGGCTGGA
  CATTAAAATG TCATGAGCTG ATCTTCAGAG ACTCTGCCTC TAGTCCTAGG CACTTTATAT
  GGACTGCCTG GTTTCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602863	NES09105397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384941					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602863	NES09105397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92159925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phf21a	PHD finger protein 21A			Intron
				Noncoding-Transcript-Variant
Rr560893	regulatory region 560893			1187 bp proximal
Rr560894	regulatory region 560894			1448 bp proximal
Rr560895	regulatory region 560895			1908 bp proximal