rs27384939 SNP Detail

Summary

• ID
  rs27384939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92160457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGAAC TCAGAAATCC
  ATCTGCCTCT GCCTCTGCCT CTGCCTCTGC CTCCCAAGTG TTGGGACTAA AGGCGTGTGC
  CACCACTGCC CAGCTGACTG CCTATTTTCT TTCTCACAAC AGCTGTATGA AAGGCTTTCA
  GGAAAGAATC AAAGGTTTAG TTCATGTTTT TCAAACTAAA ATTAATTAAT GTGATATGTT
  R
  GTAGATTTCA TGAAGCTTTT GTGCTTTAGA AATGTATATA GGTGTAGCAA CAAGGTCTTG
  CTGCTGTATC AGTAGCAGCC ATCACGGGAT CATTTTAAAT TAACCTAAAC ATTCAGACTT
  AGAAGTCTGT CATTGGCCGG GCGGCTGTGG CGCACGCCTT TAATCCCAGC ACTTGGGAAG
  CAGAGGCAGG CGGATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37602861	NES09105377	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G
ss45215798	mCV23291792	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss146930937	ENSMUSSNP5538954	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27384939					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602861	NES09105377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92160457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phf21a	PHD finger protein 21A			Intron
				Noncoding-Transcript-Variant
Rr560893	regulatory region 560893			655 bp proximal
Rr560894	regulatory region 560894			916 bp proximal
Rr560895	regulatory region 560895			1376 bp proximal
Rr560896	regulatory region 560896			1507 bp proximal