rs27384928 SNP Detail

Summary

• ID
  rs27384928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92163319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATATAC ACACACACAA
  ACACATTTTC ATCTTATTTT TTCCATTTCT TTTTCTGATT ATACAAACAG CATCCATGAT
  TTTAAAAATG CAAATATCAC AGAAATATAA ATTATAAAAG ATACTCTCCC TACAACCTAT
  GCATTTTCTA TTATATTAAT TTTACTACCA GTAGTTAATT AGTATTAACA TTTTCTATTA
  Y
  ATACCTCCAG ATATTTTCTA TTTACTTGCT AACTGAACTT TAAAACAACA GAAGCAAACT
  ATGTGTTTTA GCACAGTCTT TTCTAGGTCT TGGGCATCTT TTCATGTCTT GGACTTCCAT
  GTTAATGGCA TCTTATGGTT TGATTTTATT AGCACCTAAG CTCTAAGTTG AAGGCCTTCT
  TGCTAGTAGT ATGGCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37602850	NES09105317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27384928					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602850	NES09105317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92163319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phf21a	PHD finger protein 21A			Intron
				Noncoding-Transcript-Variant
Rr560893	regulatory region 560893			1713 bp distal
Rr560894	regulatory region 560894			1925 bp distal
Rr560895	regulatory region 560895			1272 bp distal
Rr560896	regulatory region 560896			1334 bp distal