rs27384927 SNP Detail

Summary

• ID
  rs27384927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92163577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT TGGCAGGCCA TCTGGCATAG
  Y
  AGTCATACAG ATTAGCACAG TTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37602849	NES09105318	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	T	C	T		C	T	C	C		C
ss45275054	mCV23291782	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T
ss146930949	ENSMUSSNP1811313	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320393457	CHEV_2_92173389	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27384927					SNP	T	T	C	C	T	T	C	T	C	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37602849	NES09105318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92163577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phf21a	PHD finger protein 21A			Intron
				Noncoding-Transcript-Variant
Rr560893	regulatory region 560893			1971 bp distal
Rr560895	regulatory region 560895			1530 bp distal
Rr560896	regulatory region 560896			1592 bp distal