rs27383577 SNP Detail

Summary

• ID
  rs27383577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90500794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGGCTC TTGGAGACTC
  GAAGGAGTGT GGAAAGCTTC AAACATGGAT GTCATCTGAG AAAAAGTCAT TTGAATGAGA
  ACAAAGAGAG CATTTTCTGC TAAGTTGCCT GTCTTATCCC AAGAAAGTTC ATTTCCTTAC
  TTGTATGGTC TCTAGACAAG GAAAACACCA GACTTGGCAT CAATACGGAA GACAAGGGCA
  R
  TAGAAAGGAA GGGAGAGAAT TGTTAGACTT CTTGGCCAGG TTTCAGAAAC AAATACTTCC
  CGAGCCTGGC ATTGTCAGGC CAGCGTCAGG GCAAGCCCAA GAAGACAGAC AAGGAACATT
  ACCGTTACTG ACTTGGCTCC ACACACCGCT ACTCAGGAGA AATTGGTGCG TAATCAGGGT
  CCTGGAGGGT GCTAGAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605701	NES09100932	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383577					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605701	NES09100932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90500794 () rs orientation: forward

Symbol	Name	Function Class
Gm39871	predicted gene, 39871	154 bp upstream
Gm75678	predicted gene, 75678	within coordinates
Gm75681	predicted gene, 75681	within coordinates
Rr560554	regulatory region 560554	1845 bp distal
Rr560555	regulatory region 560555	608 bp distal