rs27383575 SNP Detail

Summary

• ID
  rs27383575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90501727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTAAATG TATGTGCCAC
  CCCTACCCAC CAAGCAGAAG GGTTCTAAAA ATCTTCCCAG AGCAGATGAG AAGAGAAAAA
  TCACTAAACA GATTGGGAAA TATCTCCACT GACATTTATT GACATCATTA CTTTGCAGAG
  CAAGACACAA CACTATAACA AGTTGGCCCA GCAGCAAAGA ATGACAACCC TGAAAGTGAG
  R
  ATAGGTCAGG ATGGGATCAA CCTAATCCCC CCACTCAGGA AGCAGAGGCA GTCAGGTCTG
  AGAGTTCTAG GCCAACCTGG ACCACTCAAT AAGACCCAAG TCGGCCAGGG ATACACAGAG
  AGACCCTGTC TCAAAGAAGA ATGAATAAAG TAAAATGAAA AGAGACCATT TAAAAAATAC
  TTTGTTTTTG AGGTAGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37605699	NES09100916	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27383575					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605699	NES09100916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90501727 () rs orientation: forward

Symbol	Name	Function Class
Gm39871	predicted gene, 39871	1087 bp upstream
Gm75678	predicted gene, 75678	774 bp upstream
Gm75681	predicted gene, 75681	within coordinates
Rr397116	regulatory region 397116	1827 bp upstream
Rr560555	regulatory region 560555	1541 bp distal
Rr560556	regulatory region 560556	1791 bp proximal