rs27382479 SNP Detail

Summary

• ID
  rs27382479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92811638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAGAA GAGGCCATTA
  GATCTCCTGA AAGTGGAGTT ACAGATGGTT GTGAACTACC ATGTGAGTGC TGGGACTCAA
  ACCTGGGTCC TATGAAAGAG CAGGCTCTTA AGCTCCAGCT CCACTTTCAC TGACCTTTAA
  CCTCAGTTAG GGCAGGGGGA AGCTTTGGGC TGTTTCCATA TTTTGCTAGG CTTAGCAGAA
  W
  TAACCGATCC TCTAAGAGTG ACTGATGATA GCTCAGTTTT AGAGCAGCAT CCTTATAGTT
  GGCCCAATAA GGACAAAGGG GGAATAGATA AAGGAGAGAC AGCAGAAGAT CGGCAACAAC
  AGAAAGGCTT GGAGAGGCTG AGAAACTTGT CCAAAGGCAC AGCTAATGAT GCAAATTTGT
  GGCCTATCAT TCCCTGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600803	NES09096667	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A		A	A	A	A	A	A	A	A	A
ss45299213	mCV23155225	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss146938017	ENSMUSSNP6732298	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382479					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600803	NES09096667	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92811638 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				Noncoding-Transcript-Variant
Rr561037	regulatory region 561037			758 bp distal
Rr561038	regulatory region 561038			1619 bp proximal
Rr561039	regulatory region 561039			1843 bp proximal