rs27382472 SNP Detail

Summary

• ID
  rs27382472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92812848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCAAGG ACAAAAGGCA
  GACCCCAAGA CTGCAGCAAC CATGCTCAGC CTTATTGCTC CACTCACAGG ACCAGCCTCA
  GCTCCAAGTT TCCAATTTAA CAAGAGTCTA GGATTGGTCC CAAACCATCC AGTGTAATGG
  TCAGGAGGAC CCAGAATGAA TGTAGCTCCA AGTTTTTCTG TTCCAGACAC ATCTGGAAGG
  Y
  AGAAATCCCA TTCTTGTGTT CTCTGGGGAA CCACTGGTTC ACAGAACACC CAAGAGCACC
  TTCTCCCTTC TCCCTTTCAG TTTCTGGCCA GCCATTCAAT ATTAAATGCC AGAGAAAAGG
  GTACATGGGG AACAAGTCAC TATCACGATT TGCTGATTCA AAACAGCAAT GTCTGGAGTG
  GGTCTAACCA TTTCAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600796	NES09096674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382472					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600796	NES09096674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92812848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				Noncoding-Transcript-Variant
Rr561037	regulatory region 561037			1968 bp distal
Rr561038	regulatory region 561038			409 bp proximal
Rr561039	regulatory region 561039			633 bp proximal