rs27382471 SNP Detail

Summary

• ID
  rs27382471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92813594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCACATT CTCGGAATTC
  TGCTGTGCTC ATTCTTACGA AATACTGTCC TGTGTCACGT GGCCAAGGAC CCCAGGGTTT
  CCAGGAACTG TCTCCTCCTT GTGGTCAAGA CCAGTTGTCT ACCAGGGGGT CTGAATTCCT
  AGCTCACACT CCCTTGTTGG GAAAACAGAG CAGGGTGGGA AACACCCGGG TCCAGGCTGT
  Y
  CTGTAGAGAC TGAGTTCAAG TCTGGCAGTT CAGAGTCAGG CATCCTAGAA ATAAGTAGGT
  GACTGACAGT GGTGGGAAGG GCAGGGGTTC TGGACTGAAT CTTCCCAGAA GATAACACAT
  TGTTTTGAGT CCTGTCTCCT CACTAGCCTT GGGTACTGGA CAGATAAGCA CCGGGAGACA
  ATTCTCAGGC CTCACCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37600791	NES09096679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382471					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37600791	NES09096679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92813594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				Noncoding-Transcript-Variant
Rr561038	regulatory region 561038			within coordinates
Rr561039	regulatory region 561039			92 bp distal