rs27382358 SNP Detail

Summary

• ID
  rs27382358
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93274451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTTCCCA CGTGCTTATC TGATCTCTTT ACTGTTGCCC
  CTGTACTCTC AGGCCCTCTC TACACTAGGG CCTTTGCACA TGTAGTTTCT GTTAAAATCC
  M
  TCTTTTCAGA AATTCCTAAT GTGGATTTCT GAGACTTTCC CTCTGTGGTC TCTCTTCTAG
  TGCACTGCAC AGCCAGCCAT AGCCAATGCC CATGCCCAGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss37598977	NES09099756	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs27382358					SNP	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598977	NES09099756	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93274451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Rr561198	regulatory region 561198			626 bp distal
Rr561199	regulatory region 561199			370 bp proximal