rs27382245 SNP Detail

Summary

• ID
  rs27382245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93288865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TTGGGCTATA TGCCATACTA
  Y
  GTACTGGGCC ATGTGCCATA CTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37598864	NES09099503	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T	T	T	T	C		T	C	T		C
ss146943925	ENSMUSSNP4427800	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320395965	CHEV_2_93298677	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27382245					SNP	C	C	C	T	T	C	T	T	T	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598864	NES09099503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93288865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			493 bp upstream
Rr561205	regulatory region 561205			576 bp distal
Rr561206	regulatory region 561206			within coordinates
Rr561207	regulatory region 561207			1984 bp proximal
Tssr18996	transcription start site region 18996			1351 bp upstream
Tssr25291	transcription start site region 25291			261 bp downstream
Tssr25292	transcription start site region 25292			296 bp downstream