rs27382242 SNP Detail

Summary

• ID
  rs27382242
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93289867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TTCAGAGCAG CCTCGGGGAA
  M
  CAAAATCTAC CCCTTGTGGG AATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37598861	NES09099506	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A	C	A	A		A	C		C	A	C		C
ss45360836	mCV23858134	ABI	CRAMUS_MOUSE	f	SNP		C	C						A
ss146943932	ENSMUSSNP3977920	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						A
ss320395966	CHEV_2_93299679	CHEVERUD	SCREENING_POP	f	SNP												C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27382242					SNP	C	C	C	A	A	C	A	A	A	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598861	NES09099506	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93289867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			326 bp downstream
Rr561205	regulatory region 561205			1578 bp distal
Rr561206	regulatory region 561206			within coordinates
Rr561207	regulatory region 561207			982 bp proximal
Tssr18996	transcription start site region 18996			349 bp upstream
Tssr18997	transcription start site region 18997			1839 bp upstream
Tssr25291	transcription start site region 25291			731 bp upstream
Tssr25292	transcription start site region 25292			694 bp upstream