rs27382240 SNP Detail

Summary

• ID
  rs27382240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93289974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCCCTTG TGGGAATCTT GTGCCCAAAT GACTGACCCT
  TCACTCCTGC CTTTTCTGCG CTGAACAGGG AAGCCTGGGT ACTTTTCCTT CCCATCCTGA
  Y
  CAGACACTCA CTGCTAACTG GCACAAGCTC CCTGACTGGT CCCAGACTCC ACTCCTTCAT
  GGTGAACATA GGGTGTTCTT GAAGGCCACA TCCTGTCACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598859	NES09099508	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382240					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598859	NES09099508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93289974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			433 bp downstream
Rr561205	regulatory region 561205			1685 bp distal
Rr561206	regulatory region 561206			within coordinates
Rr561207	regulatory region 561207			875 bp proximal
Tssr18996	transcription start site region 18996			242 bp upstream
Tssr18997	transcription start site region 18997			1732 bp upstream
Tssr25291	transcription start site region 25291			838 bp upstream
Tssr25292	transcription start site region 25292			801 bp upstream