rs27382239 SNP Detail

Summary

• ID
  rs27382239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93290056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG GTGAACATAG GGTGTTCTTG
  R
  AGGCCACATC CTGTCACTTA ACAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598858	NES09099509	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G		G	G	G	A	G	G	A	G	A
ss45206074	mCV23858146	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss146943948	ENSMUSSNP5437436	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382239					SNP	A	A	A	G	G	A	G	A	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598858	NES09099509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93290056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			515 bp downstream
Rr561205	regulatory region 561205			1767 bp distal
Rr561206	regulatory region 561206			within coordinates
Rr561207	regulatory region 561207			793 bp proximal
Tssr18996	transcription start site region 18996			160 bp upstream
Tssr18997	transcription start site region 18997			1650 bp upstream
Tssr25291	transcription start site region 25291			920 bp upstream
Tssr25292	transcription start site region 25292			883 bp upstream