rs27382235 SNP Detail

Summary

• ID
  rs27382235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93290843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTTAAGG CCCCAAAGGT TCCTCTCATC CTTCCTTCAA
  ATATCTTCTG TCACATCCCT GACTCAAGCC CCTTTCCAGA CGCTGAGTGA CCGAAGGGTA
  Y
  GGGCCATCGT TGTGCCATTG CTTGGCATTT CACGTCACAG AATGGGAGTG GTGGTGGGAG
  GGTGCTGTAC ACACCAGGCA CAGTTGGTGC TGAATGTCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598854	NES09099451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382235					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598854	NES09099451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93290843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			1439 bp proximal
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			1302 bp downstream
Rr397140	regulatory region 397140			1340 bp upstream
Rr397141	regulatory region 397141			1837 bp upstream
Rr561206	regulatory region 561206			429 bp distal
Rr561207	regulatory region 561207			6 bp proximal
Rr561208	regulatory region 561208			1903 bp proximal
Tssr18996	transcription start site region 18996			615 bp downstream
Tssr18997	transcription start site region 18997			863 bp upstream
Tssr18998	transcription start site region 18998			1527 bp upstream
Tssr25291	transcription start site region 25291			1707 bp upstream
Tssr25292	transcription start site region 25292			1670 bp upstream
Tssr25293	transcription start site region 25293			1446 bp downstream
Tssr25294	transcription start site region 25294			1865 bp downstream
Tssr25295	transcription start site region 25295			1891 bp downstream
Tssr25296	transcription start site region 25296			1959 bp downstream