rs27382234 SNP Detail

Summary

• ID
  rs27382234
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93290938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTCCT TAAGGCCCCA
  AAGGTTCCTC TCATCCTTCC TTCAAATATC TTCTGTCACA TCCCTGACTC AAGCCCCTTT
  CCAGACGCTG AGTGACCGAA GGGTATGGGC CATCGTTGTG CCATTGCTTG GCATTTCACG
  TCACAGAATG GGAGTGGTGG TGGGAGGGTG CTGTACACAC CAGGCACAGT TGGTGCTGAA
  W
  GTCTTCTTCT CCTGAGGGTG CACCCTCCTC ACTGCAGCAA AGTCTCATCT AATGCCACCG
  AAAGGCTGAC AGCCATGGAG CAGGCCAAAG ATTAATCAGG GCTGGGGAGT CCAGGCAGAA
  AGTCCTGCTC AACTCTAAAG CCCATCCCTG CTACCCACTC TGATTCCCCA GAGATTCCTC
  ACATATTCTG TGCCCCCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598853	NES09099452	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382234					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598853	NES09099452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93290938 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			1344 bp proximal
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			1397 bp downstream
Rr397140	regulatory region 397140			1245 bp upstream
Rr397141	regulatory region 397141			1742 bp upstream
Rr561206	regulatory region 561206			524 bp distal
Rr561207	regulatory region 561207			within coordinates
Rr561208	regulatory region 561208			1808 bp proximal
Tssr18996	transcription start site region 18996			710 bp downstream
Tssr18997	transcription start site region 18997			768 bp upstream
Tssr18998	transcription start site region 18998			1432 bp upstream
Tssr25291	transcription start site region 25291			1802 bp upstream
Tssr25292	transcription start site region 25292			1765 bp upstream
Tssr25293	transcription start site region 25293			1351 bp downstream
Tssr25294	transcription start site region 25294			1770 bp downstream
Tssr25295	transcription start site region 25295			1796 bp downstream
Tssr25296	transcription start site region 25296			1864 bp downstream