rs27382233 SNP Detail

Summary

• ID
  rs27382233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93291038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTATGGGC CATCGTTGTG
  CCATTGCTTG GCATTTCACG TCACAGAATG GGAGTGGTGG TGGGAGGGTG CTGTACACAC
  CAGGCACAGT TGGTGCTGAA TGTCTTCTTC TCCTGAGGGT GCACCCTCCT CACTGCAGCA
  AAGTCTCATC TAATGCCACC GAAAGGCTGA CAGCCATGGA GCAGGCCAAA GATTAATCAG
  S
  GCTGGGGAGT CCAGGCAGAA AGTCCTGCTC AACTCTAAAG CCCATCCCTG CTACCCACTC
  TGATTCCCCA GAGATTCCTC ACATATTCTG TGCCCCCCAC CACACACAGT CTTTTCCACG
  TGGTCCGGCG GCCTTCAGCC AGGCTTTCCA GAGTACTTTC CAGCTGACTC TACAGCAGGG
  GCTCATCTCC CACCAAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598852	NES09099454	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382233					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598852	NES09099454	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93291038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			1244 bp proximal
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			1497 bp downstream
Rr397140	regulatory region 397140			1145 bp upstream
Rr397141	regulatory region 397141			1642 bp upstream
Rr561206	regulatory region 561206			624 bp distal
Rr561207	regulatory region 561207			within coordinates
Rr561208	regulatory region 561208			1708 bp proximal
Tssr18996	transcription start site region 18996			810 bp downstream
Tssr18997	transcription start site region 18997			668 bp upstream
Tssr18998	transcription start site region 18998			1332 bp upstream
Tssr25291	transcription start site region 25291			1902 bp upstream
Tssr25292	transcription start site region 25292			1865 bp upstream
Tssr25293	transcription start site region 25293			1251 bp downstream
Tssr25294	transcription start site region 25294			1670 bp downstream
Tssr25295	transcription start site region 25295			1696 bp downstream
Tssr25296	transcription start site region 25296			1764 bp downstream