rs27382230 SNP Detail

Summary

• ID
  rs27382230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93292318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA CATTTTGCGG AAGTCGCTGA
  R
  GTCTAGCTAC GCAATCTGAA AGCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37598849	NES09099426	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A		G	A	A	G		G	A	G	G		G
ss45306963	mCV23858158	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss146943963	ENSMUSSNP3426131	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320395971	CHEV_2_93302130	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27382230					SNP	G	G	A	A	G	A	G	G	A	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598849	NES09099426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93292318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			within coordinates
Gm10804	predicted gene 10804			within coordinates
Rr397140	regulatory region 397140			within coordinates
Rr397141	regulatory region 397141			362 bp upstream
Rr561206	regulatory region 561206			1904 bp distal
Rr561207	regulatory region 561207			within coordinates
Rr561208	regulatory region 561208			428 bp proximal
Tssr18997	transcription start site region 18997			595 bp downstream
Tssr18998	transcription start site region 18998			52 bp upstream
Tssr25293	transcription start site region 25293			17 bp upstream
Tssr25294	transcription start site region 25294			390 bp downstream
Tssr25295	transcription start site region 25295			416 bp downstream
Tssr25296	transcription start site region 25296			484 bp downstream