rs27382228 SNP Detail

Summary

• ID
  rs27382228
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93293041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTC CAGCTCCAGA TTAGAGGCGA
  S
  GCCACGTACG CGCCTTGCTC CGCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37598847	NES09099430	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	C		G	C	C	G		G	C	G	G		G
ss45336010	mCV23858159	ABI	CRAMUS_MOUSE	f	SNP		G					G		C
ss320395972	CHEV_2_93302853	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27382228					SNP	G	G	C	C	G	C	G	G	C	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598847	NES09099430	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93293041 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	Intron
Cpgi11945	CpG island 11945	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr397140	regulatory region 397140	557 bp downstream
Rr397141	regulatory region 397141	60 bp downstream
Rr561207	regulatory region 561207	296 bp distal
Rr561208	regulatory region 561208	within coordinates
Tssr18997	transcription start site region 18997	1318 bp downstream
Tssr18998	transcription start site region 18998	651 bp downstream
Tssr25293	transcription start site region 25293	740 bp upstream
Tssr25294	transcription start site region 25294	312 bp upstream
Tssr25295	transcription start site region 25295	261 bp upstream
Tssr25296	transcription start site region 25296	202 bp upstream