rs27382227 SNP Detail

Summary

• ID
  rs27382227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93293228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAGAGG CGAGGCCACG
  TACGCGCCTT GCTCCGCCTG CTTTGGGCCT CCAGGGGATA AGGCCGACCT GGGACCCCAA
  GTCTGCCGCT CCAGTCTCTT CCAGCCTTGC GGAGTCTCAC CCCCTATGGT CTCCCCCATC
  CTTCCCACTT CCCAACTATG CCGCTGGCGG TCCTCTGAAG CCCTCCTGTT CACCCCTTTG
  M
  GTCCATCACT TTCCCCAGGG GCTCACCCTT AGGCCTCCAA CTGGGAGGCA ACTCCCCGGC
  TCCGCCCTTC CCGGGGGATT CTCTGCTCCG CCCCGAGCCT GTTCCCCTTA GCAACCTGGC
  TCAGGGCTAT AAGCCTGGGG CCCCGACGCT GGCATTCTAG GACGGGCGTA TCCTGGTGCA
  ACCCGGGAAT GGCGTGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598846	NES09099432	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382227					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598846	NES09099432	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93293228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				mRNA-UTR
Cpgi11945	CpG island 11945			within coordinates
Gm10804	predicted gene 10804			within coordinates
Rr397140	regulatory region 397140			744 bp downstream
Rr397141	regulatory region 397141			247 bp downstream
Rr561207	regulatory region 561207			483 bp distal
Rr561208	regulatory region 561208			within coordinates
Tssr18997	transcription start site region 18997			1505 bp downstream
Tssr18998	transcription start site region 18998			838 bp downstream
Tssr25293	transcription start site region 25293			927 bp upstream
Tssr25294	transcription start site region 25294			499 bp upstream
Tssr25295	transcription start site region 25295			448 bp upstream
Tssr25296	transcription start site region 25296			389 bp upstream