rs27382226 SNP Detail

Summary

• ID
  rs27382226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93293753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCTGCT CTTCAGTCCC
  TACCACTCCT GGGCTACTTT ATTTGTACCC ATTTTATTAT TTGCACCCAT TTTACAGATG
  CACAGCCCAA GCTTTAGAGA GGGGAAGTCG TGGGCTAGAG TCTAACAGCA GAGTCGTTCG
  TGAACCATTC CAACGTCTCG AATCATACTT AATACTTGTC CTAGCTTTTC TGGATTTTGG
  Y
  CCTTGAAGAA GTGGCCCAGG CCAGCCAGCT GTGGTACAGC AGGCTGGTGA AGGGGTGGCA
  GGAGAGGGCA GAGGGCCTGA GACCTCCATG GCTGGCTTCT TCTTTGAGAA AGTGGTCTGC
  CAAAGATCTC CAGATGTCTG ACACATCACA ATGCACTACA GACCATGGAT CTGCCTCAGG
  CAGGTTACCA GGTTAACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37598845	NES09099396	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27382226					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37598845	NES09099396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93293753 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	458 bp upstream
Cpgi11945	CpG island 11945	275 bp distal
Gm10804	predicted gene 10804	within coordinates
Rr397140	regulatory region 397140	1269 bp downstream
Rr397141	regulatory region 397141	772 bp downstream
Rr561207	regulatory region 561207	1008 bp distal
Rr561208	regulatory region 561208	within coordinates
Tssr18998	transcription start site region 18998	1363 bp downstream
Tssr25293	transcription start site region 25293	1452 bp upstream
Tssr25294	transcription start site region 25294	1024 bp upstream
Tssr25295	transcription start site region 25295	973 bp upstream
Tssr25296	transcription start site region 25296	914 bp upstream