rs27379936 SNP Detail

Summary

• ID
  rs27379936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93967834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAAATT TATCACATAT
  GTTACTTGGG ACGCTAAGAG CTATATACTA ATTTCATAGC ATCTAACTGC AGTGCAAACT
  TTCGTAGCTT TTTTATGAAG ACAAAAATCT CTGAAAAACT AAATTTAAAA GGTATATGAC
  TCTATTACTA AGAGTTGTAT TTTAAAACCA GAAAATTGCT ATGAAATATT AGATGCTTTC
  R
  AAAAGATTAA AAGATGTCTT AGAGTTAGGG TTTCTACTGC TTCAATGACC CTATGAGTAA
  TAACAAATTG GTGAAGAAAG GGTTTATTTG GTTGACACTT CCATATTGTA GTCTATCACT
  GAAGAAAGTC AGAACAGGAA CTCAAATAGG TCAGAAACCT GGCAGCAAGA GCTGATGCAA
  AGGCCATGGA AAAGTGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595961	NES09085505	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G		A	A	A	A	A	A	A	A	A
ss45230208	mCV25041728	ABI	CRAMUS_MOUSE	f	SNP		A	G				A		A
ss146951331	ENSMUSSNP1408958	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379936					SNP	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595961	NES09085505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93967834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12			Intron
				Noncoding-Transcript-Variant
Rr561340	regulatory region 561340			1369 bp proximal