rs27379931 SNP Detail

Summary

• ID
  rs27379931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93969105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGGTT ACTAAAGCTA
  TCATATGAGT TCACTGTTGA AGGGGAAAAC CCTTTCTCCT CCTATTAGAG TAAACTACTC
  TTTCATAAAC TGTGTTGTAA CACAGGACAA AAGGCCACAA TGCACTATGC AAGTCAAAGC
  ACTGACTATC AGTCCCTCTT TGGGACTTAA CAAACCACAA AAGACCTACC ATCCTATTCC
  R
  GGATGCAGAA AATAGTCACC TGCTTGGCTG GTGTGTGAAT GTGTTTCGTA CTTGTCTTCC
  CAGCACTTGT CACCTCAACT GTTTCAGTGC CTATGTTTTC TCCACTGGAG GGCACAGTGA
  GCTTAAAGAA AACTTGGCTA ATCTGTTCCA TCATCTCAGG AAAGATGGAT AAAAAAGGTT
  AGCTCTGCTG TTGGGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37595956	NES09085471	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27379931					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595956	NES09085471	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93969105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12			Intron
				Noncoding-Transcript-Variant
Rr561340	regulatory region 561340			98 bp proximal