rs27379929 SNP Detail

Summary

• ID
  rs27379929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93969344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTTTCG TACTTGTCTT
  CCCAGCACTT GTCACCTCAA CTGTTTCAGT GCCTATGTTT TCTCCACTGG AGGGCACAGT
  GAGCTTAAAG AAAACTTGGC TAATCTGTTC CATCATCTCA GGAAAGATGG ATAAAAAAGG
  TTAGCTCTGC TGTTGGGGAA GATGTCTCAG TATTACTTAA GAATTTCATT TCTGTTCTGT
  K
  CTTGAAAACC ACTGCAAAAG GTGATCTTTA ACTGGCTAGA CCAATTATGT TCCAAGCATC
  ATTTTCTAGA AAATGAATGT AAATAAAGGA TGAGGGAAAC AAAGAAGGAG AAACACTATG
  GTGGAAATGA CCCATGTCAG GCATCGAGAA CACCAAATCT GCAAGTAGCA GATCTGTTAG
  CAGATGCAGC TGTGCCAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37595954	NES09085473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27379929					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37595954	NES09085473	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93969344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12			Intron
				Noncoding-Transcript-Variant
Rr561340	regulatory region 561340			120 bp distal