rs27378580 SNP Detail

Summary

• ID
  rs27378580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103641953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGATGTGG ACCAAGATGC
  CTTGCTTCAT GGGAAAGTTT TTTGTTGTCC CTACCACAGA TTCCAACTAC ACAACCCTTC
  CACTCTTCAC CAGAGTACCG GCAGCTACTT CTGTGACCAT GCACTTCTCA GAAAGTATGA
  AATCTGTGTT CACCATCCAC TTCATTGGGT CTCTGACAGC CAGTGGCAGG GAAGGAGATA
  Y
  GCAGCTCCGT CTTGACTCAG GTGAGGGCCT AGGTGGCGCC ACAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAGCCA TCAGGTCTTC CTTAATGACT AATGAGCCAT TCTCCAACAG
  GGAATATTTA CTTTTTGGTT TTCGTGTTTT TGTTTTTTTA TGTGTGTAAC TGCCTGTGTT
  CTGTGTGCTT GCCTGGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571802	NES09063562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27378580					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571802	NES09063562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103641953 () rs orientation: forward

Symbol	Name	Function Class
4930547E08Rik	RIKEN cDNA 4930547E08 gene	986 bp upstream
Gm13878	predicted gene 13878	within coordinates
Gm75184	predicted gene, 75184	within coordinates
Rr561938	regulatory region 561938	979 bp distal
Rr561939	regulatory region 561939	878 bp distal