rs27378475 SNP Detail

Summary

• ID
  rs27378475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103673827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CCCCAGCGGC CACTGTTTTC
  R
  TGCAGGAACC ACAGTGCCAG ATGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37571696	NES09062727	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		G		A	G	G	G
ss45316952	mCV22333588	ABI	CRAMUS_MOUSE	f	SNP	G			A	G
ss147139770	ENSMUSSNP1444231	ENSEMBL	ENSEMBL_Sanger	f	SNP					G
ss320442902	CHEV_2_103683639	CHEVERUD	SCREENING_POP	f	SNP						A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27378475					SNP	G	G	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571696	NES09062727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103673827 () rs orientation: forward

Symbol	Name	Function Class
Gm13879	predicted gene 13879	within coordinates
Gm56364	predicted gene, 56364	within coordinates
Gm75184	predicted gene, 75184	within coordinates
Rr373620	regulatory region 373620	301 bp downstream
Rr373621	regulatory region 373621	208 bp upstream
Rr561947	regulatory region 561947	832 bp distal