rs27378276 SNP Detail

Summary

• ID
  rs27378276
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTGGTGT GGGACTCAGC
  CCAGTATGGG CTTTATTAAT CCATGTAGCC CTCCAAGCAA ATATTATCCT TGTCTCACCA
  TTAGAGATGG CAAGACAGAA GCATAACCAG AAAGTTACTG GCCTGATGTC ACATGGCTGC
  CAAGTGACAG AGTTAAGGCT CTGGCACCTT TTGTGCATTA TAAATGGTAG AGGCAATGTT
  W
  AGTATAAAGA TGGTTGCATT AAATCAAAGA TTCAACTCAA ATTAAGCTTT CCTTGAAGCA
  TGCTTTAGGG TTCCTAGTGA GTGAAATGGT GATGGGCTCT CTCTGTAGTC CTGGCCGTAG
  GCAGACACTC ATCATGTGCT TGGCTCTAGT GAACCTCCAG GCAGCTTTAG GCAACCCATT
  CCTTGCTGCA TCTCCACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577803	NES09065867	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	A	A	T		T	A	A	A		A
ss320437772	CHEV_2_102295289	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27378276					SNP	A	T	A	A	A	A	A	A	T	T	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577803	NES09065867	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285477 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	1294 bp distal
Rr561698	regulatory region 561698	1541 bp distal