rs27378275 SNP Detail

Summary

• ID
  rs27378275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTAAG TATAAAGATG
  GTTGCATTAA ATCAAAGATT CAACTCAAAT TAAGCTTTCC TTGAAGCATG CTTTAGGGTT
  CCTAGTGAGT GAAATGGTGA TGGGCTCTCT CTGTAGTCCT GGCCGTAGGC AGACACTCAT
  CATGTGCTTG GCTCTAGTGA ACCTCCAGGC AGCTTTAGGC AACCCATTCC TTGCTGCATC
  W
  CCACCTGGCC TCCTTCATTC TGATTTTTGC TGAGTTACAT ACTCTTCTCA AAGACAGAGA
  TGCCCAAGTG CACTTTTTTT TTTGATATTT CTACAAAAGT AAGAGAAAAT GTGTTGGTGC
  CCACAAGTCA ACCCCTCCTT CCAGGAGATG GAAGCAAGAT TGTAAGTTTA AGGCCAGCCT
  GAGTTAAATG GTGAGACCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37577802	NES09065869	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	A		A	T	T	A
ss320437773	CHEV_2_102295482	CHEVERUD	SCREENING_POP	f	SNP								A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27378275					SNP	T	A	T	T	T	T	A	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577802	NES09065869	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285670 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	1487 bp distal
Rr561698	regulatory region 561698	1734 bp distal