rs27378166 SNP Detail

Summary

• ID
  rs27378166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103865321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAATGT TGGGTCATTA
  GGCATGTAAG ATAACTAAAA GAGTGAGAAA ACCTTTTTGT TTGGTGTTTA CAAAGTAGTG
  AAACTAAGGT TTCAACTGAG GCTGATCTGA CCCCAGGATC AATGCTCTAC TATATTGCCT
  AATTATGGCT AGAAATATTA ATAAGGTATT TCAGTGTGAT TTGTTAATAC CCATGAGGAT
  R
  CACTATTACT GCTCATCTGC TTCCCACCTG AAGTTTCCAG ACTTACTCAC TAGGTGGCGC
  CATGCACATG CTCTGGTTTT GGGAAGCTAG CGTTGGAATG TGTTCTTCCT GACTCATTAG
  AACCCATCTT TCTGAAATAG CATTCCCTTC TCTTCAGATT CCCACTGTAA TGTCTCATGA
  AAATGTCACT TTCAGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570994	NES09070466	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27378166					SNP	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570994	NES09070466	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103865321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			within coordinates
Rr562011	regulatory region 562011			43 bp proximal
Rr562012	regulatory region 562012			716 bp proximal
Rr562013	regulatory region 562013			1548 bp proximal